In 2025, as part of eligibility requirement for Basic Payment Scheme, businesses must undertake two from the following five baselines: biodiversity audit, carbon audit, soil analysis, animal health and welfare plan and integrated pest management plan as part of a revised rural payments process that encourages Nature Positive activities.
Objective 3: Embed nature positive Farming, Fishing and Forestry
Priority Action 15. Introduce an agricultural support framework which delivers for nature restoration and biodiversity alongside climate and food production outcomes
The Scottish Government’s agricultural reform programme introduced a “two-out-of-five” baseline requirement for the Basic Payment Scheme (from 2025), requiring applicants to complete at least two of the following: biodiversity audit, carbon audit, soil analysis, animal health and welfare plan, or integrated pest management plan as part of conditionality linked to public support payments.
The requirement is being implemented through the rural payments administrative system, with compliance assessed as part of application eligibility processes rather than outcome-based ecological monitoring.
There is currently no published central dataset reporting aggregate results from these audits (e.g. biodiversity audit findings, soil outcomes, or carbon audit results) at national level, limiting the ability to assess ecological impact from implementation.
Existing audit tools (e.g. soil analysis and biodiversity audits) are delivered through multiple providers and advisory systems, but there is no single integrated national reporting framework linking audit completion to ecological outcomes.
SEFARI and NatureScot research evidence highlights that while farm-level environmental audits can improve awareness and management planning, ecological outcomes depend on sustained action beyond compliance-based completion of assessments.
SEFARI research on agricultural systems and natural capital shows that environmental audits can support improved land management decisions when linked to follow-up action, particularly in relation to soil condition, habitat management, and input reduction.
NatureScot biodiversity evidence indicates that monitoring and assessment tools are important for identifying habitat condition and targeting interventions, but biodiversity recovery depends on consistent implementation of management changes rather than audit completion alone.
State of Nature Scotland reports continued long-term declines across multiple species groups, indicating that current land management changes have not yet been sufficient to reverse biodiversity loss at national scale.
Soil Association Scotland evidence highlights that biodiversity and soil outcomes improve when audits are embedded within active management systems (e.g. regenerative practices), rather than treated as standalone compliance exercises.
Taken together, this evidence indicates that the introduction of mandatory baseline audits represents a significant policy shift toward nature-positive conditionality in agricultural support. However, in the absence of centralised outcome monitoring, the ecological impact of implementation cannot yet be evidenced, and benefits remain uncertain and dependent on follow-up action.
Scottish Government – Agriculture Reform Route Map
Scottish Rural Payments Scheme
NatureScot – Biodiversity Indicators
State of Nature Scotland
Implement actions specifically benefitting farmland species as part of ongoing support and the new agricultural payments framework backed by advisory support including new greening requirements which will be introduced in 2026 and form part of the enhanced tier of the future framework.
In 2025 there will be new peatland and wetland standards under Cross Compliance which will prohibit a range of activities from being carried out on peatland and wetland areas. We will continue to develop rural support mechanisms to incorporate further requirements to protect and enhance soil health, promote control of soil erosion/compaction and maintain / enhance soil organic matter through…
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